This is the first study on Egyptian mummies [albeit Late Period ones] that I know of using the technique of Next Generation Sequencing:
https://publikationen.uni-tuebingen.de/xmlui/bitstream/handle/10900/49936/pdf/R.Khairat_next_generation_sequencing_of_DNA_extracted_from_mummified_tissue.pdf?sequence=1&isAllowed=y
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